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Faculty of Science        Department of BioTechnology            SC Library

 

 

SCBT401 : Bioinformatics Laboratory

First semester, Academic year 2011

Software requirement :

Java runtime environment (Version 6 Update 13) full install (for PDB viewer in web browser) 15.53 MB

PyMOL (3D structure viewer)

Artemis

Course outline :

Period

Date*

Laboratory Topics

1

Fri, Jun 10

Overview of tools in Bioinformatics

·       Slide handout (1 slide/page)

·       Pathogen_Genomics_Bangkok_complete_manual.pdf

·       Lab manual

(room: P114)

2

Fri, Jun 17

Biological Database and Sequence Analysis I

·       Slide handout         4 slides/page version          6 slides/page version

·       Lab manual

·       Sequence lists :

(left mouse select "save target as" for download)

o  pl6_human

o  pl6_mouse

(room: P114)

3

Fri, Jun 24

Biological Database and Sequence Analysis II

·       Slide handout

·       Lab manual 3

·       Sequence list (click mouse to open file or use right mouse button and save link as) :

o   araC.faa

o   ara-LacZ.fa

 

·       Lab manual 4

·       multalin alignment

·       Sequence list (click mouse to open file or use right mouse button and save link as) :

o   bzip_brut_fsa.txt

o   bzip_multalin_fsa.txt

(room: P114)

4

Fri, Jul 1

 

Biological Database and Sequence Analysis III

·       Slide handout

·       Lab manual 5

·       Lab manual 6

(room: P114)

5

Fri, Jul 8

 

Molecular technology I (DNA sequencing)

MU-OU:CRC (room: K546)

6

Fri, Jul 22

Molecular technology II  (Gene promoter analysis)

·       Slide handout

·       Lab manual

(room: P114)

 

Fri, Jul 29

13:30-16:30

Midterm examination

(lecture period 1 – 7 /lab period 1-6)

(room: to be announced)

7

Fri, Aug 5

Genomics

·       Slide handout

·       Lab manual

(room: P114)

 

Fri, Aug 12

No class (Queen’s Birthday)

8

Fri, Aug 19

Phylogenetics I

·       Slide handout

·       Lab manual

(room: P114)

9

Fri, Aug 26

Phylogenetics II

·       Slide handout

·       Lab manual

(room: P114)

10

Fri, Sep 9

Self study and do assignment

11

Fri, Sep 16

MALDI-TOF

(room: N201)

12

Thu, Sep 22

Proteomics I

·       Slide handout

·       Lab manual

(room: P114)

13

Fri, Sep 23

Proteomics II

·       Slide handout

·       Lab manual

(room: P114)

 

Thu, Sep 29

13:30-16:30

Final examination

(lecture period 8 - 14/lab 7 - 13)

(room: to be announced)

 

SCBT401  2008 class

SCBT401  2009 class

SCBT401  2010 class

 

 

 

Prepared and supported by Academic Information Unit.  Stang monkolsuk library and Information division. Faculty of Science. Mahidol University.

Last update : June 10, 2011